gDRutils

This is the development version of gDRutils; for the stable release version, see gDRutils.

A package with helper functions for processing drug response data

Bioconductor version: Development (3.21)

This package contains utility functions used throughout the gDR platform to fit data, manipulate data, and convert and validate data structures. This package also has the necessary default constants for gDR platform. Many of the functions are utilized by the gDRcore package.

Author: Bartosz Czech [aut] (ORCID: ), Arkadiusz Gladki [cre, aut] (ORCID: ), Aleksander Chlebowski [aut], Marc Hafner [aut] (ORCID: ), Pawel Piatkowski [aut], Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut], Allison Vuong [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDRutils")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDRutils")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("gDRutils")

gDRutils	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Infrastructure, Software
Version	1.5.0
In Bioconductor since	BioC 3.18 (R-4.3) (1 year)
License	Artistic-2.0
Depends	R (>= 4.2)
Imports	BiocParallel, BumpyMatrix, checkmate, data.table, drc, jsonlite, jsonvalidate, methods, MultiAssayExperiment, S4Vectors, stats, stringr, SummarizedExperiment
System Requirements
URL	https://github.com/gdrplatform/gDRutils https://gdrplatform.github.io/gDRutils/
Bug Reports	https://github.com/gdrplatform/gDRutils/issues

Suggests	BiocManager, BiocStyle, futile.logger, gDRstyle(>= 1.1.5), gDRtestData(>= 1.1.10), IRanges, knitr, lintr, purrr, qs, rcmdcheck, rmarkdown, scales, testthat, tools, yaml
Linking To
Enhances
Depends On Me	gDR
Imports Me	gDRcore, gDRimport
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	gDRutils_1.5.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gDRutils
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDRutils
Bioc Package Browser	https://code.bioconductor.org/browse/gDRutils/
Package Short Url	https://bioconductor.org/packages/gDRutils/
Package Downloads Report	Download Stats