gDR

This is the development version of gDR; for the stable release version, see gDR.

Umbrella package for R packages in the gDR suite

Bioconductor version: Development (3.21)

Package is a part of the gDR suite. It reexports functions from other packages in the gDR suite that contain critical processing functions and utilities. The vignette walks through the full processing pipeline for drug response analyses that the gDR suite offers.

Author: Allison Vuong [aut], Bartosz Czech [aut] (ORCID: ), Arkadiusz Gladki [cre, aut] (ORCID: ), Marc Hafner [aut] (ORCID: ), Dariusz Scigocki [aut], Janina Smola [aut], Sergiu Mocanu [aut]

Maintainer: Arkadiusz Gladki <gladki.arkadiusz at gmail.com>

Citation (from within R, enter citation("gDR")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("gDR")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, ShinyApps, Software
Version	1.5.0
In Bioconductor since	BioC 3.18 (R-4.3) (1 year)
License	Artistic-2.0
Depends	R (>= 4.2), gDRcore(>= 1.1.19), gDRimport(>= 1.1.9), gDRutils(>= 1.1.12)
Imports
System Requirements
URL	https://github.com/gdrplatform/gDR https://gdrplatform.github.io/gDR/
Bug Reports	https://github.com/gdrplatform/gDR/issues

Suggests	BiocStyle, BumpyMatrix, futile.logger, gDRstyle(>= 1.1.5), gDRtestData(>= 1.1.10), kableExtra, knitr, markdown, purrr, rmarkdown, SummarizedExperiment, testthat, yaml
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/gDR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/gDR
Package Short Url	https://bioconductor.org/packages/gDR/
Package Downloads Report	Download Stats