tuberculosis
This is the development version of tuberculosis; for the stable release version, see tuberculosis.
Tuberculosis Gene Expression Data for Machine Learning
Bioconductor version: Development (3.21)
The tuberculosis R/Bioconductor package features tuberculosis gene expression data for machine learning. All human samples from GEO that did not come from cell lines, were not taken postmortem, and did not feature recombination have been included. The package has more than 10,000 samples from both microarray and sequencing studies that have been processed from raw data through a hyper-standardized, reproducible pipeline.
Author: Lucas Schiffer [aut, cre] (ORCID:
Maintainer: Lucas Schiffer <schiffer.lucas at gmail.com>
citation("tuberculosis")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tuberculosis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tuberculosis")| tuberculosis | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, ExpressionData, Homo_sapiens_Data, MicroarrayData, ReproducibleResearch, SequencingData |
| Version | 1.11.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0), SummarizedExperiment |
| Imports | AnnotationHub, ExperimentHub, S4Vectors, dplyr, magrittr, purrr, rlang, stringr, tibble, tidyr |
| System Requirements | |
| URL | https://github.com/schifferl/tuberculosis |
| Bug Reports | https://github.com/schifferl/tuberculosis/issues |
See More
| Suggests | BiocStyle, ggplot2, hrbrthemes, knitr, readr, rmarkdown, scater, usethis, utils |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tuberculosis_1.11.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/tuberculosis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tuberculosis |
| Package Short Url | https://bioconductor.org/packages/tuberculosis/ |
| Package Downloads Report | Download Stats |