tissueTreg
This is the development version of tissueTreg; for the stable release version, see tissueTreg.
TWGBS and RNA-seq data from tissue T regulatory cells from mice
Bioconductor version: Development (3.21)
The package provides ready to use epigenomes (obtained from TWGBS) and transcriptomes (RNA-seq) from various tissues as obtained in the study (Delacher and Imbusch 2017, PMID: 28783152). Regulatory T cells (Treg cells) perform two distinct functions: they maintain self-tolerance, and they support organ homeostasis by differentiating into specialized tissue Treg cells. The underlying dataset characterises the epigenetic and transcriptomic modifications for specialized tissue Treg cells.
Author: Charles Imbusch [aut, cre], Michael Delacher [aut], Markus Feuerer [aut], Benedikt Brors [aut]
Maintainer: Charles Imbusch <c.imbusch at dkfz.de>
citation("tissueTreg")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("tissueTreg")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("tissueTreg")| tissueTreg | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, Mus_musculus_Data, RNASeqData, SequencingData, Tissue |
| Version | 1.25.0 |
| License | GPL (>= 2) |
| Depends | R (>= 3.5) |
| Imports | |
| System Requirements | |
| URL | https://github.com/cimbusch/tissueTreg |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, ExperimentHub, bsseq, SummarizedExperiment, ggplot2, reshape2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DMRcate |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | tissueTreg_1.25.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/tissueTreg |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/tissueTreg |
| Package Short Url | https://bioconductor.org/packages/tissueTreg/ |
| Package Downloads Report | Download Stats |