easierData

This is the development version of easierData; for the stable release version, see easierData.

easier internal data and exemplary dataset from IMvigor210CoreBiologies package

Bioconductor version: Development (3.21)

Access to internal data required for the functional performance of easier package and exemplary bladder cancer dataset with both processed RNA-seq data and information on response to ICB therapy generated by Mariathasan et al. "TGF-B attenuates tumour response to PD-L1 blockade by contributing to exclusion of T cells", published in Nature, 2018 [doi:10.1038/nature25501](https://doi.org/10.1038/nature25501). The data is made available via [`IMvigor210CoreBiologies`](http://research-pub.gene.com/IMvigor210CoreBiologies/) package under the CC-BY license.

Author: Oscar Lapuente-Santana [aut, cre] (ORCID: ), Federico Marini [aut] (ORCID: ), Arsenij Ustjanzew [aut] (ORCID: ), Francesca Finotello [aut] (ORCID: ), Federica Eduati [aut] (ORCID: )

Maintainer: Oscar Lapuente-Santana <o.lapuente.santana at tue.nl>

Citation (from within R, enter citation("easierData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("easierData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("easierData")

easier data	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CancerData, ExperimentData, ExperimentHub, ImmunoOncologyData, RNASeqData, ReproducibleResearch
Version	1.11.0
License	MIT + file LICENSE
Depends	R (>= 4.1.0)
Imports	ExperimentHub, AnnotationHub, utils, SummarizedExperiment
System Requirements
URL

Suggests	knitr, rmarkdown, BiocStyle, testthat (>= 3.0.0)
Linking To
Enhances
Depends On Me
Imports Me	easier
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	easierData_1.11.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/easierData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/easierData
Package Short Url	https://bioconductor.org/packages/easierData/
Package Downloads Report	Download Stats