curatedAdipoChIP
This is the development version of curatedAdipoChIP; for the stable release version, see curatedAdipoChIP.
A Curated ChIP-Seq Dataset of MDI-induced Differentiated Adipocytes (3T3-L1)
Bioconductor version: Development (3.21)
A curated dataset of publicly available ChIP-sequencing of transcription factors, chromatin remodelers and histone modifications in the 3T3-L1 pre-adipocyte cell line. The package document the data collection, pre-processing and processing of the data. In addition to the documentation, the package contains the scripts that was used to generated the data.
Author: Mahmoud Ahmed [aut, cre] (ORCID:
Maintainer: Mahmoud Ahmed <mahmoud.s.fahmy at students.kasralainy.edu.eg>
citation("curatedAdipoChIP")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("curatedAdipoChIP")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("curatedAdipoChIP")| Using curatedAdipoChIP | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ChIPSeqData, ExperimentData, ExperimentHub, GEO, SequencingData |
| Version | 1.21.0 |
| License | GPL-3 |
| Depends | R (>= 3.6), SummarizedExperiment, ExperimentHub |
| Imports | |
| System Requirements | |
| URL | https://github.com/MahShaaban/curatedAdipoChIP |
| Bug Reports | https://github.com/MahShaaban/curatedAdipoChIP/issues |
See More
| Suggests | knitr, rmarkdown, GenomicFeatures, ChIPseeker, AnnotationDbi, S4Vectors, DESeq2, fastqcr, devtools, testthat, readr, dplyr, tidyr, ggplot2 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | curatedAdipoChIP_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/curatedAdipoChIP |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/curatedAdipoChIP |
| Package Short Url | https://bioconductor.org/packages/curatedAdipoChIP/ |
| Package Downloads Report | Download Stats |