TransOmicsData

This is the development version of TransOmicsData; for the stable release version, see TransOmicsData.

A collection of trans-omics datasets across various biological systems

Bioconductor version: Development (3.21)

Contains a collection of trans-omics datasets generated using various sequencing technologies such as RNA-seq, Mass spectrometry and ChIP-seq. Modalities include the bulk profiling of the phosphoproteome, proteome, transcriptome and epigenome. Data reflects the timecourses of different developmental systems from the mouse or human.

Author: Carissa Chen [aut] (ORCID: ), Di Xiao [aut, cre] (ORCID: ), Pengyi Yang [aut] (ORCID: )

Maintainer: Di Xiao <d.xiao at sydney.edu.au>

Citation (from within R, enter citation("TransOmicsData")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("TransOmicsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TransOmicsData")

TransOmicsData: A collection of trans-omics datasets across various biological systems	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	ChIPSeqData, ExperimentData, ExperimentHub, MassSpectrometryData, RNASeqData, SequencingData, Tissue
Version	1.1.0
License	GPL-3 + file LICENSE
Depends
Imports	S4Vectors, utils
System Requirements
URL	https://github.com/PYangLab/TransOmicsData
Bug Reports	https://support.bioconductor.org/t/TransOmicsData

Suggests	BiocStyle, knitr, rmarkdown, RefManageR, sessioninfo, testthat, ExperimentHub
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TransOmicsData_1.1.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/TransOmicsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TransOmicsData
Package Short Url	https://bioconductor.org/packages/TransOmicsData/
Package Downloads Report	Download Stats