TMExplorer
This is the development version of TMExplorer; for the stable release version, see TMExplorer.
A Collection of Tumour Microenvironment Single-cell RNA Sequencing Datasets and Corresponding Metadata
Bioconductor version: Development (3.21)
This package provides a tool to search and download a collection of tumour microenvironment single-cell RNA sequencing datasets and their metadata. TMExplorer aims to act as a single point of entry for users looking to study the tumour microenvironment at the single cell level. Users can quickly search available datasets using the metadata table and then download the ones they are interested in for analysis.
Author: Erik Christensen [aut, cre], Alaine Naidas [aut], David Chen [aut], Parisa Shooshtari [aut]
Maintainer: Erik Christensen <echris3 at uwo.ca>
citation("TMExplorer")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("TMExplorer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("TMExplorer")| TMExplorer | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CancerData, ExperimentData, ExpressionData, GEO, PackageTypeData, RNASeqData, SequencingData, SingleCellData |
| Version | 1.17.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.1), SingleCellExperiment, BiocFileCache |
| Imports | methods, Matrix |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/shooshtarilab/TMExplorer/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | TMExplorer_1.17.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/TMExplorer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/TMExplorer |
| Package Short Url | https://bioconductor.org/packages/TMExplorer/ |
| Package Downloads Report | Download Stats |