SpatialDatasets
This is the development version of SpatialDatasets; for the stable release version, see SpatialDatasets.
Collection of spatial omics datasets
Bioconductor version: Development (3.21)
This is a collection of publically available spatial omics datasets. Where possible we have curated these datasets as either SpatialExperiments, MoleculeExperiments or CytoImageLists and included annotations of the sample characteristics.
Author: Farhan Ameen [aut], Nick Robertson [aut], Alex Qin [aut], Elijah Willie [aut], Ellis Patrick [aut, cre]
Maintainer: Ellis Patrick <ellis.patrick at sydney.edu.au>
citation("SpatialDatasets")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SpatialDatasets")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SpatialDatasets")| The SpatialDataset package | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, Mus_musculus_Data, ReproducibleResearch, SingleCellData, SpatialData |
| Version | 1.3.1 |
| License | GPL-3 |
| Depends | ExperimentHub, SpatialExperiment |
| Imports | utils |
| System Requirements | |
| URL | https://github.com/SydneyBioX/SpatialDatasets |
| Bug Reports | https://github.com/SydneyBioX/SpatialDatasets/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | lisaClust, spicyR, spicyWorkflow |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SpatialDatasets_1.3.1.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SpatialDatasets |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SpatialDatasets |
| Package Short Url | https://bioconductor.org/packages/SpatialDatasets/ |
| Package Downloads Report | Download Stats |