MethylSeqData
This is the development version of MethylSeqData; for the stable release version, see MethylSeqData.
Collection of Public DNA Methylation Sequencing Datasets
Bioconductor version: Development (3.21)
Base-level (i.e. cytosine-level) counts for a collection of public bisulfite-seq datasets (e.g., WGBS and RRBS), provided as SummarizedExperiment objects with sample- and base-level metadata.
Author: Peter Hickey [aut, cre]
Maintainer: Peter Hickey <peter.hickey at gmail.com>
citation("MethylSeqData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("MethylSeqData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MethylSeqData")| User's Guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Homo_sapiens_Data, MethylSeqData, Mus_musculus_Data, SequencingData |
| Version | 1.15.0 |
| License | CC0 |
| Depends | SummarizedExperiment |
| Imports | ExperimentHub, HDF5Array, rhdf5, GenomeInfoDb, S4Vectors, GenomicRanges, stats, IRanges, utils |
| System Requirements | |
| URL |
See More
| Suggests | BiocFileCache, BiocStyle, data.table, knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MethylSeqData_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/MethylSeqData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MethylSeqData |
| Package Short Url | https://bioconductor.org/packages/MethylSeqData/ |
| Package Downloads Report | Download Stats |