HarmanData
This is the development version of HarmanData; for the stable release version, see HarmanData.
Data for the Harman package
Bioconductor version: Development (3.21)
Datasets of accompany Harman, a PCA and constrained optimisation based technique. Contains three example datasets: IMR90, Human lung fibroblast cells exposed to nitric oxide; NPM, an experiment to test skin penetration of metal oxide nanoparticles following topical application of sunscreens in non-pregnant mice; OLF; an experiment to gauge the response of human olfactory neurosphere-derived (hONS) cells to ZnO nanoparticles. Since version 1.24, this package also contains the Infinium5 dataset, a set of batch correction adjustments across 5 Illumina Infinium Methylation BeadChip datasets. This file does not contain methylation data, but summary statistics of 5 datasets after correction. There is also an EpiSCOPE_sample file as exampling for the new methylation clustering functionality in Harman.
Author: Yalchin Oytam [aut], Josh Bowden [aut], Jason Ross [aut, cre]
Maintainer: Jason Ross <jason.ross at csiro.au>
citation("HarmanData")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("HarmanData")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HarmanData")| HarmanData | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExpressionData, Homo_sapiens_Data, MicroarrayData, Mus_musculus_Data |
| Version | 1.35.0 |
| License | GPL-3 |
| Depends | R (>= 3.5.0) |
| Imports | |
| System Requirements | |
| URL | http://www.bioinformatics.csiro.au/harman/ |
See More
| Suggests | BiocGenerics, BiocStyle, knitr, rmarkdown, Harman(>= 1.23.3) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Harman |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | HarmanData_1.35.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/HarmanData |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/HarmanData |
| Package Short Url | https://bioconductor.org/packages/HarmanData/ |
| Package Downloads Report | Download Stats |