BioImageDbs
This is the development version of BioImageDbs; for the stable release version, see BioImageDbs.
Bio- and biomedical imaging dataset for machine learning and deep learning (for ExperimentHub)
Bioconductor version: Development (3.21)
The package provides a bioimage dataset for the image analysis using machine learning and deep learning. The dataset includes microscopy imaging data with supervised labels. The data is provided as R list data that can be loaded to Keras/tensorflow in R.
Author: Satoshi Kume [aut, cre] (ORCID:
Maintainer: Satoshi Kume <satoshi.kume.1984 at gmail.com>
citation("BioImageDbs")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("BioImageDbs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("BioImageDbs")| Providing Bioimage Dataset for ExperimentHub | HTML | R Script |
| The BioImageBbs Datasets | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | CellCulture, ExperimentData, ExperimentHub, Tissue |
| Version | 1.13.0 |
| License | Artistic-2.0 |
| Depends | R (>= 4.1.0) |
| Imports | ExperimentHub, AnnotationHub, markdown, rmarkdown, EBImage, magick, magrittr, filesstrings, animation, einsum |
| System Requirements | |
| URL | https://kumes.github.io/BioImageDbs/ |
See More
| Suggests | knitr, BiocStyle, purrr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | BioImageDbs_1.13.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/BioImageDbs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/BioImageDbs |
| Package Short Url | https://bioconductor.org/packages/BioImageDbs/ |
| Package Downloads Report | Download Stats |