shinyMethyl
This is the development version of shinyMethyl; for the stable release version, see shinyMethyl.
Interactive visualization for Illumina methylation arrays
Bioconductor version: Development (3.21)
Interactive tool for visualizing Illumina methylation array data. Both the 450k and EPIC array are supported.
Author: Jean-Philippe Fortin [cre, aut], Kasper Daniel Hansen [aut]
Maintainer: Jean-Philippe Fortin <fortin946 at gmail.com>
Citation (from within R, enter
citation("shinyMethyl")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("shinyMethyl")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("shinyMethyl")| shinyMethyl: interactive visualization of Illumina 450K methylation arrays | HTML | R Script |
| Reference Manual |
Details
| biocViews | DNAMethylation, MethylationArray, Microarray, Preprocessing, QualityControl, Software, TwoChannel |
| Version | 1.43.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (10 years) |
| License | Artistic-2.0 |
| Depends | |
| Imports | Biobase, BiocGenerics, graphics, grDevices, htmltools, MatrixGenerics, methods, minfi, RColorBrewer, shiny, stats, utils |
| System Requirements | |
| URL | https://github.com/Jfortin1/shinyMethyl |
| Bug Reports | https://github.com/Jfortin1/shinyMethyl |
See More
| Suggests | shinyMethylData, minfiData, BiocStyle, knitr, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | shinyMethyl_1.43.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/shinyMethyl |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/shinyMethyl |
| Bioc Package Browser | https://code.bioconductor.org/browse/shinyMethyl/ |
| Package Short Url | https://bioconductor.org/packages/shinyMethyl/ |
| Package Downloads Report | Download Stats |