immunogenViewer
This is the development version of immunogenViewer; for the stable release version, see immunogenViewer.
Visualization and evaluation of protein immunogens
Bioconductor version: Development (3.21)
Plots protein properties and visualizes position of peptide immunogens within protein sequence. Allows evaluation of immunogens based on structural and functional annotations to infer suitability for antibody-based methods aiming to detect native proteins.
Author: Katharina Waury [aut, cre] (ORCID:
Maintainer: Katharina Waury <kathiwaury at gmail.com>
citation("immunogenViewer")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("immunogenViewer")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("immunogenViewer")| Using immunogenViewer to evaluate and choose antibodies | HTML | R Script |
| Reference Manual |
Details
| biocViews | FeatureExtraction, Proteomics, Software, Visualization |
| Version | 1.1.0 |
| In Bioconductor since | BioC 3.20 (R-4.4) (< 6 months) |
| License | Apache License (>= 2) |
| Depends | R (>= 4.0) |
| Imports | ggplot2, httr, jsonlite, patchwork, UniProt.ws |
| System Requirements | |
| URL | https://github.com/kathiwaury/immunogenViewer |
| Bug Reports | https://github.com/kathiwaury/immunogenViewer/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat (>= 3.0.0), DT |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | immunogenViewer_1.1.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/immunogenViewer |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/immunogenViewer |
| Bioc Package Browser | https://code.bioconductor.org/browse/immunogenViewer/ |
| Package Short Url | https://bioconductor.org/packages/immunogenViewer/ |
| Package Downloads Report | Download Stats |