eds

This is the development version of eds; for the stable release version, see eds.

eds: Low-level reader for Alevin EDS format

Bioconductor version: Development (3.21)

This packages provides a single function, readEDS. This is a low-level utility for reading in Alevin EDS format into R. This function is not designed for end-users but instead the package is predominantly for simplifying package dependency graph for other Bioconductor packages.

Author: Avi Srivastava [aut, cre], Michael Love [aut, ctb]

Maintainer: Avi Srivastava <asrivastava at cs.stonybrook.edu>

Citation (from within R, enter citation("eds")):

Installation

To install this package, start R (version "4.5") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

# The following initializes usage of Bioc devel
BiocManager::install(version='devel')

BiocManager::install("eds")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("eds")

eds: Low-level reader function for Alevin EDS format	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	GeneExpression, RNASeq, Sequencing, SingleCell, Software
Version	1.9.0
In Bioconductor since	BioC 3.16 (R-4.2) (2 years)
License	GPL-2
Depends	Matrix
Imports	Rcpp
System Requirements	C++11
URL	https://github.com/mikelove/eds

Suggests	knitr, tximportData, testthat (>= 3.0.0)
Linking To	Rcpp
Enhances
Depends On Me
Imports Me	singleCellTK
Suggests Me	tximport
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	eds_1.9.0.tar.gz
Windows Binary (x86_64)
macOS Binary (x86_64)
macOS Binary (arm64)
Source Repository	git clone https://git.bioconductor.org/packages/eds
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/eds
Bioc Package Browser	https://code.bioconductor.org/browse/eds/
Package Short Url	https://bioconductor.org/packages/eds/
Package Downloads Report	Download Stats