dStruct
This is the development version of dStruct; for the stable release version, see dStruct.
Identifying differentially reactive regions from RNA structurome profiling data
Bioconductor version: Development (3.21)
dStruct identifies differentially reactive regions from RNA structurome profiling data. dStruct is compatible with a broad range of structurome profiling technologies, e.g., SHAPE-MaP, DMS-MaPseq, Structure-Seq, SHAPE-Seq, etc. See Choudhary et al., Genome Biology, 2019 for the underlying method.
Author: Krishna Choudhary [aut, cre] (ORCID:
Maintainer: Krishna Choudhary <kchoudhary at ucdavis.edu>
citation("dStruct")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("dStruct")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("dStruct")| Differential RNA structurome analysis using `dStruct` | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Sequencing, Software, StatisticalMethod, StructuralPrediction |
| Version | 1.13.0 |
| In Bioconductor since | BioC 3.14 (R-4.1) (3 years) |
| License | GPL (>= 2) |
| Depends | R (>= 4.1) |
| Imports | zoo, ggplot2, purrr, reshape2, parallel, IRanges, S4Vectors, rlang, grDevices, stats, utils |
| System Requirements | |
| URL | https://github.com/dataMaster-Kris/dStruct |
| Bug Reports | https://github.com/dataMaster-Kris/dStruct/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, tidyverse, testthat (>= 3.0.0) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dStruct_1.13.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/dStruct |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dStruct |
| Bioc Package Browser | https://code.bioconductor.org/browse/dStruct/ |
| Package Short Url | https://bioconductor.org/packages/dStruct/ |
| Package Downloads Report | Download Stats |