cellmigRation
This is the development version of cellmigRation; for the stable release version, see cellmigRation.
Track Cells, Analyze Cell Trajectories and Compute Migration Statistics
Bioconductor version: Development (3.21)
Import TIFF images of fluorescently labeled cells, and track cell movements over time. Parallelization is supported for image processing and for fast computation of cell trajectories. In-depth analysis of cell trajectories is enabled by 15 trajectory analysis functions.
Author: Salim Ghannoum [aut, cph], Damiano Fantini [aut, cph], Waldir Leoncio [cre, aut], Øystein Sørensen [aut]
Maintainer: Waldir Leoncio <w.l.netto at medisin.uio.no>
citation("cellmigRation")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("cellmigRation")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cellmigRation")| cellmigRation | HTML | R Script |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | CellBiology, DataImport, DataRepresentation, Software |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.13 (R-4.1) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.1), methods, foreach |
| Imports | tiff, graphics, stats, utils, reshape2, parallel, doParallel, grDevices, matrixStats, FME, SpatialTools, sp, vioplot, FactoMineR, Hmisc |
| System Requirements | |
| URL | https://github.com/ocbe-uio/cellmigRation/ |
| Bug Reports | https://github.com/ocbe-uio/cellmigRation/issues |
See More
| Suggests | knitr, rmarkdown, dplyr, ggplot2, RUnit, BiocGenerics, BiocManager, kableExtra, rgl |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | cellmigRation_1.15.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/cellmigRation |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/cellmigRation |
| Bioc Package Browser | https://code.bioconductor.org/browse/cellmigRation/ |
| Package Short Url | https://bioconductor.org/packages/cellmigRation/ |
| Package Downloads Report | Download Stats |