adverSCarial
This is the development version of adverSCarial; for the stable release version, see adverSCarial.
adverSCarial, generate and analyze the vulnerability of scRNA-seq classifier to adversarial attacks
Bioconductor version: Development (3.21)
adverSCarial is an R Package designed for generating and analyzing the vulnerability of scRNA-seq classifiers to adversarial attacks. The package is versatile and provides a format for integrating any type of classifier. It offers functions for studying and generating two types of attacks, single gene attack and max change attack. The single-gene attack involves making a small modification to the input to alter the classification. The max-change attack involves making a large modification to the input without changing its classification. The package provides a comprehensive solution for evaluating the robustness of scRNA-seq classifiers against adversarial attacks.
Author: Ghislain FIEVET [aut, cre] (ORCID:
Maintainer: Ghislain FIEVET <ghislain.fievet at gmail.com>
citation("adverSCarial")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("adverSCarial")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("adverSCarial")| Vign01_adverSCarial | HTML | R Script |
| Vign02_overView_analysis | HTML | R Script |
| Vign03_adapt_classifiers | HTML | |
| Vign04_advRandWalkMinChange | HTML | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Classification, SingleCell, Software, Transcriptomics |
| Version | 1.5.0 |
| In Bioconductor since | BioC 3.18 (R-4.3) (1 year) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.5.0) |
| Imports | gtools, S4Vectors, methods, DelayedArray |
| System Requirements | |
| URL |
See More
| Suggests | knitr, RUnit, BiocGenerics, TENxPBMCData, CHETAH, stringr, LoomExperiment |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | adverSCarial_1.5.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/adverSCarial |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/adverSCarial |
| Bioc Package Browser | https://code.bioconductor.org/browse/adverSCarial/ |
| Package Short Url | https://bioconductor.org/packages/adverSCarial/ |
| Package Downloads Report | Download Stats |