SQLDataFrame
This is the development version of SQLDataFrame; for the stable release version, see SQLDataFrame.
Representation of SQL tables in DataFrame metaphor
Bioconductor version: Development (3.21)
Implements bindings for SQL tables that are compatible with Bioconductor S4 data structures, namely the DataFrame and DelayedArray. This allows SQL-derived data to be easily used inside other Bioconductor objects (e.g., SummarizedExperiments) while keeping everything on disk.
Author: Qian Liu [aut, cre] (ORCID:
Maintainer: Qian Liu <Qian.Liu at RoswellPark.org>
citation("SQLDataFrame")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("SQLDataFrame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("SQLDataFrame")| User guide | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DataRepresentation, Infrastructure, Software |
| Version | 1.21.0 |
| In Bioconductor since | BioC 3.10 (R-3.6) (5 years) |
| License | LGPL (>= 3); File LICENSE |
| Depends | DelayedArray, S4Vectors |
| Imports | stats, utils, methods, BiocGenerics, RSQLite, duckdb, DBI |
| System Requirements | |
| URL | https://github.com/Bioconductor/SQLDataFrame |
| Bug Reports | https://github.com/Bioconductor/SQLDataFrame/issues |
See More
| Suggests | knitr, rmarkdown, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SQLDataFrame_1.21.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/SQLDataFrame |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/SQLDataFrame |
| Bioc Package Browser | https://code.bioconductor.org/browse/SQLDataFrame/ |
| Package Short Url | https://bioconductor.org/packages/SQLDataFrame/ |
| Package Downloads Report | Download Stats |