NCIgraph
This is the development version of NCIgraph; for the stable release version, see NCIgraph.
Pathways from the NCI Pathways Database
Bioconductor version: Development (3.21)
Provides various methods to load the pathways from the NCI Pathways Database in R graph objects and to re-format them.
Author: Laurent Jacob
Maintainer: Laurent Jacob <laurent.jacob at gmail.com>
Citation (from within R, enter
citation("NCIgraph")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("NCIgraph")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("NCIgraph")| NCIgraph: networks from the NCI pathway integrated database as graphNEL objects. | R Script | |
| Reference Manual |
Details
| biocViews | GraphAndNetwork, Pathways, Software |
| Version | 1.55.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13.5 years) |
| License | GPL-3 |
| Depends | R (>= 4.0.0) |
| Imports | graph, KEGGgraph, methods, RBGL, RCy3, R.oo |
| System Requirements | |
| URL |
See More
| Suggests | Rgraphviz |
| Linking To | |
| Enhances | DEGraph |
| Depends On Me | |
| Imports Me | DEGraph |
| Suggests Me | DEGraph |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | NCIgraph_1.55.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/NCIgraph |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/NCIgraph |
| Bioc Package Browser | https://code.bioconductor.org/browse/NCIgraph/ |
| Package Short Url | https://bioconductor.org/packages/NCIgraph/ |
| Package Downloads Report | Download Stats |