AHMassBank
This is the development version of AHMassBank; for the stable release version, see AHMassBank.
MassBank Annotation Resources for AnnotationHub
Bioconductor version: Development (3.21)
Supplies AnnotationHub with MassBank metabolite/compound annotations bundled in CompDb SQLite databases. CompDb SQLite databases contain general compound annotation as well as fragment spectra representing fragmentation patterns of compounds' ions. MassBank data is retrieved from https://massbank.eu/MassBank and processed using helper functions from the CompoundDb Bioconductor package into redistributable SQLite databases.
Author: Johannes Rainer [cre] (ORCID:
Maintainer: Johannes Rainer <Johannes.Rainer at eurac.edu>
citation("AHMassBank")):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("AHMassBank")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AHMassBank")| Provide EnsDb databases for AnnotationHub | HTML | R Script |
| Reference Manual |
Details
| biocViews | AnnotationHubSoftware, MassSpectrometry, Software |
| Version | 1.7.0 |
| In Bioconductor since | BioC 3.17 (R-4.3) (1.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 4.2) |
| Imports | AnnotationHubData(>= 1.5.24) |
| System Requirements | |
| URL | https://github.com/jorainer/AHMassBank |
| Bug Reports | https://github.com/jorainer/AHMassBank/issues |
See More
| Suggests | BiocStyle, knitr, AnnotationHub(>= 2.7.13), rmarkdown, methods, CompoundDb(>= 1.1.4) |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AHMassBank_1.7.0.tar.gz |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/AHMassBank |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AHMassBank |
| Bioc Package Browser | https://code.bioconductor.org/browse/AHMassBank/ |
| Package Short Url | https://bioconductor.org/packages/AHMassBank/ |
| Package Downloads Report | Download Stats |