GenomicDistributionsData

DOI: 10.18129/B9.bioc.GenomicDistributionsData    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GenomicDistributionsData.

Reference data for GenomicDistributions package

Bioconductor version: 3.15

This package provides ready to use reference data for GenomicDistributions package. Raw data was obtained from ensembldb and processed with helper functions. Data files are available for the following genome assemblies: hg19, hg38, mm9 and mm10.

Author: Michal Stolarczyk [aut], Kristyna Kupkova [aut, cre], Jose Verdezoto [aut], John Lawson [ctb], Jason Smith [ctb], Nathan C. Sheffield [ctb]

Maintainer: Kristyna Kupkova <kristynakupkova at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GenomicDistributionsData")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GenomicDistributionsData")

 

HTML	R Script	1. Getting started with GenomicDistributionsData
PDF		Reference Manual
Text		NEWS
Text		LICENSE

Details

biocViews	ExperimentData, ExperimentHub, Genome
Version	1.4.0
License	BSD_2_clause + file LICENSE
Depends	R (>= 4.1)
Imports	ExperimentHub(>= 1.14.0), AnnotationHub, AnnotationFilter, data.table, utils, BSgenome, GenomeInfoDb, GenomicFeatures, GenomicRanges, ensembldb
LinkingTo
Suggests	knitr, BiocStyle, rmarkdown
SystemRequirements
Enhances
URL
BugReports	http://github.com/databio/GenomicDistributionsData
Depends On Me
Imports Me
Suggests Me	GenomicDistributions
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GenomicDistributionsData_1.4.0.tar.gz
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/GenomicDistributionsData
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GenomicDistributionsData
Package Short Url	https://bioconductor.org/packages/GenomicDistributionsData/
Package Downloads Report	Download Stats