This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see gwascat.
Bioconductor version: 3.15
Represent and model data in the EMBL-EBI GWAS catalog.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
Citation (from within R,
enter citation("gwascat")
):
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("gwascat")
For older versions of R, please refer to the appropriate Bioconductor release.
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("gwascat")
HTML | R Script | gwascat -- GRanges for GWAS hits in EBI catalog |
HTML | R Script | gwascat: structuring and querying the NHGRI GWAS catalog |
Reference Manual | ||
Text | NEWS |
biocViews | Genetics, Software |
Version | 2.28.1 |
In Bioconductor since | BioC 2.10 (R-2.15) (10.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.5.0), methods |
Imports | S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), GenomicFeatures, readr, Biostrings, AnnotationDbi, BiocFileCache, snpStats, VariantAnnotation, AnnotationHub |
LinkingTo | |
Suggests | DO.db, DT, knitr, RBGL, testthat, rmarkdown, Gviz, Rsamtools, IRanges, rtracklayer, graph, ggbio, DelayedArray, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, BiocStyle |
SystemRequirements | |
Enhances | SNPlocs.Hsapiens.dbSNP144.GRCh37 |
URL | |
Depends On Me | liftOver, vtpnet |
Imports Me | circRNAprofiler |
Suggests Me | GenomicScores, grasp2db, hmdbQuery, ldblock, parglms, TFutils |
Links To Me | |
Build Report |
Follow Installation instructions to use this package in your R session.
Source Package | gwascat_2.28.1.tar.gz |
Windows Binary | gwascat_2.28.1.zip (64-bit only) |
macOS Binary (x86_64) | gwascat_2.28.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/gwascat |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/gwascat |
Package Short Url | https://bioconductor.org/packages/gwascat/ |
Package Downloads Report | Download Stats |
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