Onassis

DOI: 10.18129/B9.bioc.Onassis    

This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.

This package is for version 3.15 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Onassis.

OnASSIs Ontology Annotation and Semantic SImilarity software

Bioconductor version: 3.15

A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.

Author:

Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Onassis")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

PDF		Reference Manual

Details

biocViews	Annotation, Clustering, DataImport, GeneTarget, Network, Software
Version	1.18.0
In Bioconductor since	BioC 3.6 (R-3.4) (5 years)
License	GPL-2
Depends	R (>= 4.0), rJava, OnassisJavaLibs
Imports	GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify
LinkingTo
Suggests	BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra
SystemRequirements	Java (>= 1.8)
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package
Windows Binary
macOS Binary (x86_64)
Source Repository	git clone https://git.bioconductor.org/packages/Onassis
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Onassis
Package Short Url	https://bioconductor.org/packages/Onassis/
Package Downloads Report	Download Stats