GeneBreak

DOI: 10.18129/B9.bioc.GeneBreak    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see GeneBreak.

Gene Break Detection

Bioconductor version: 3.15

Recurrent breakpoint gene detection on copy number aberration profiles.

Author: Evert van den Broek, Stef van Lieshout

Maintainer: Evert van den Broek <vandenbroek.evert at gmail.com>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GeneBreak")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GeneBreak")

 

PDF	R Script	GeneBreak
PDF		Reference Manual
Text		NEWS

Details

biocViews	CopyNumberVariation, DNASeq, Genetics, Sequencing, Software, Visualization, WholeGenome, aCGH
Version	1.26.0
In Bioconductor since	BioC 3.2 (R-3.2) (7 years)
License	GPL-2
Depends	R (>= 3.2), QDNAseq, CGHcall, CGHbase, GenomicRanges
Imports	graphics, methods
LinkingTo
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SystemRequirements
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URL	https://github.com/stefvanlieshout/GeneBreak
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Imports Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GeneBreak_1.26.0.tar.gz
Windows Binary	GeneBreak_1.26.0.zip
macOS Binary (x86_64)	GeneBreak_1.26.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GeneBreak
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GeneBreak
Package Short Url	https://bioconductor.org/packages/GeneBreak/
Package Downloads Report	Download Stats