CNTools

DOI: 10.18129/B9.bioc.CNTools    

This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see CNTools.

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 3.15

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Installation

To install this package, start R (version "4.2") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("CNTools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF	R Script	NCTools HowTo
PDF		Reference Manual

Details

biocViews	CopyNumberVariation, Microarray, Software
Version	1.52.0
In Bioconductor since	BioC 2.5 (R-2.10) (13 years)
License	LGPL
Depends	R (>= 2.10), methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me	cghMCR
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	CNTools_1.52.0.tar.gz
Windows Binary	CNTools_1.52.0.zip (64-bit only)
macOS Binary (x86_64)	CNTools_1.52.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/CNTools
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/CNTools
Package Short Url	https://bioconductor.org/packages/CNTools/
Package Downloads Report	Download Stats