To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scsR")
In most cases, you don't need to download the package archive at all.
scsR
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see scsR.
SiRNA correction for seed mediated off-target effect
Bioconductor version: 3.0
Corrects genome-wide siRNA screens for seed mediated off-target effect. Suitable functions to identify the effective seeds/miRNAs and to visualize their effect are also provided in the package.
Author: Andrea Franceschini
Maintainer: Andrea Franceschini <andrea.franceschini at isb-sib.ch>, Roger Meier <roger.meier at lmsc.ethz.ch>, Christian von Mering <mering at imls.uzh.ch>
Citation (from within R,
enter citation("scsR")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("scsR")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("scsR")
| R Script | scsR Vignette | |
| Reference Manual |
Details
| biocViews | Preprocessing, Software |
| Version | 1.3.2 |
| In Bioconductor since | BioC 2.14 (R-3.1) (2 years) |
| License | GPL-2 |
| Depends | R (>= 2.14.0), STRINGdb, methods, BiocGenerics, Biostrings, IRanges, plyr, tcltk |
| Imports | sqldf, hash, ggplot2, graphics, grDevices, RColorBrewer |
| LinkingTo | |
| Suggests | RUnit |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | scsR_1.3.2.tar.gz |
| Windows Binary | scsR_1.3.2.zip |
| Mac OS X 10.6 (Snow Leopard) | scsR_1.3.2.tgz |
| Mac OS X 10.9 (Mavericks) | scsR_1.3.2.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/scsR/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/scsR/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
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