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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annaffy")
In most cases, you don't need to download the package archive at all.
annaffy
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see annaffy.
Annotation tools for Affymetrix biological metadata
Bioconductor version: 3.0
Functions for handling data from Bioconductor Affymetrix annotation data packages. Produces compact HTML and text reports including experimental data and URL links to many online databases. Allows searching biological metadata using various criteria.
Author: Colin A. Smith <annaffy at colinsmith.org>
Maintainer: Colin A. Smith <annaffy at colinsmith.org>
Citation (from within R,
enter citation("annaffy")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("annaffy")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("annaffy")
| R Script | annaffy Primer | |
| Reference Manual |
Details
| biocViews | Annotation, GO, Microarray, OneChannel, Pathways, ReportWriting, Software |
| Version | 1.38.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | LGPL |
| Depends | R (>= 2.5.0), methods, Biobase, GO.db, KEGG.db |
| Imports | AnnotationDbi(>= 0.1.15) |
| LinkingTo | |
| Suggests | hgu95av2.db, multtest, tcltk |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | a4Base, a4Reporting, PGSEA, webbioc |
| Imports Me | affycoretools |
| Suggests Me | AffyExpress, ArrayTools, BiocCaseStudies, oneChannelGUI |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | annaffy_1.38.0.tar.gz |
| Windows Binary | annaffy_1.38.0.zip |
| Mac OS X 10.6 (Snow Leopard) | annaffy_1.38.0.tgz |
| Mac OS X 10.9 (Mavericks) | annaffy_1.38.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/annaffy/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/annaffy/ |
| Package Downloads Report | Download Stats |
Documentation »
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