To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

In most cases, you don't need to download the package archive at all.

CopyNumber450k

This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see CopyNumber450k.

R package for calling CNV from Illumina 450k methylation microarrays

Bioconductor version: 3.0

This package contains a set of functions that allow CNV calling from Illumina 450k methylation microarrays.

Author: Simon Papillon-Cavanagh, Jean-Philippe Fortin, Nicolas De Jay

Maintainer: Simon Papillon-Cavanagh <simon.papillon-cavanagh at mail.mcgill.ca>

Citation (from within R, enter citation("CopyNumber450k")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CopyNumber450k")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CopyNumber450k")

PDF	R Script	CopyNumber450k User's Guide
PDF		Reference Manual

biocViews	CopyNumberVariation, DNAMethylation, Microarray, Preprocessing, QualityControl, Software
Version	1.2.0
In Bioconductor since	BioC 2.14 (R-3.1) (2 years)
License	Artistic-2.0
Depends	Biobase, minfi, DNAcopy, preprocessCore, BiocGenerics
Imports	methods
LinkingTo
Suggests	CopyNumber450kData, minfiData
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me
Build Report

Follow Installation instructions to use this package in your R session.

Package Source	CopyNumber450k_1.2.0.tar.gz
Windows Binary	CopyNumber450k_1.2.0.zip
Mac OS X 10.6 (Snow Leopard)	CopyNumber450k_1.2.0.tgz
Mac OS X 10.9 (Mavericks)	CopyNumber450k_1.2.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/CopyNumber450k/tree/release-3.0
Package Short Url	http://bioconductor.org/packages/CopyNumber450k/
Package Downloads Report	Download Stats

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