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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")
In most cases, you don't need to download the package archive at all.
ChromHeatMap
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ChromHeatMap.
Heat map plotting by genome coordinate
Bioconductor version: 3.0
The ChromHeatMap package can be used to plot genome-wide data (e.g. expression, CGH, SNP) along each strand of a given chromosome as a heat map. The generated heat map can be used to interactively identify probes and genes of interest.
Author: Tim F. Rayner
Maintainer: Tim F. Rayner <tfrayner at gmail.com>
Citation (from within R,
enter citation("ChromHeatMap")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChromHeatMap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChromHeatMap")
| R Script | Plotting expression data with ChromHeatMap | |
| Reference Manual |
Details
| biocViews | Software, Visualization |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), BiocGenerics(>= 0.3.2), annotate(>= 1.20.0), AnnotationDbi(>= 1.4.0) |
| Imports | Biobase(>= 2.17.8), graphics, grDevices, methods, stats, IRanges, rtracklayer |
| LinkingTo | |
| Suggests | ALL, hgu95av2.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChromHeatMap_1.20.0.tar.gz |
| Windows Binary | ChromHeatMap_1.20.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ChromHeatMap_1.20.0.tgz |
| Mac OS X 10.9 (Mavericks) | ChromHeatMap_1.20.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChromHeatMap/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/ChromHeatMap/ |
| Package Downloads Report | Download Stats |
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