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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")
In most cases, you don't need to download the package archive at all.
ChIPsim
|
This package is for version 3.0 of Bioconductor; for the stable, up-to-date release version, see ChIPsim.
Simulation of ChIP-seq experiments
Bioconductor version: 3.0
A general framework for the simulation of ChIP-seq data. Although currently focused on nucleosome positioning the package is designed to support different types of experiments.
Author: Peter Humburg
Maintainer: Peter Humburg <Peter.Humburg at well.ox.ac.uk>
Citation (from within R,
enter citation("ChIPsim")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("ChIPsim")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ChIPsim")
| R Script | Simulating ChIP-seq experiments | |
| Reference Manual |
Details
| biocViews | ChIPSeq, Infrastructure, Software |
| Version | 1.20.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | GPL (>= 2) |
| Depends | Biostrings(>= 2.29.2) |
| Imports | IRanges, XVector, Biostrings, ShortRead, graphics, methods, stats, utils |
| LinkingTo | |
| Suggests | actuar, zoo |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | ChIPsim_1.20.0.tar.gz |
| Windows Binary | ChIPsim_1.20.0.zip |
| Mac OS X 10.6 (Snow Leopard) | ChIPsim_1.20.0.tgz |
| Mac OS X 10.9 (Mavericks) | ChIPsim_1.20.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/ChIPsim/tree/release-3.0 |
| Package Short Url | http://bioconductor.org/packages/ChIPsim/ |
| Package Downloads Report | Download Stats |
Documentation »
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